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Baier earned a diploma in mathematics at the University of Mannheim in 1990, and stayed at the same university for graduate study in computer science, completing her Ph.D. there in 1994. Her dissertation, Transitionssystem- und Baum-Semantiken für CCS, was supervised by Mila Majster-Cederbaum. She earned a habilitation at Mannheim in 1999.
She became an associate professor for computer science at the University of Bonn in 1999, and moved to TU Dresden as a professor in 2006.