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His 1793 book, The Morbid Anatomy of Some of the Most Important Parts of the Human Body, is considered the first systematic study of pathology, and the first publication in English on pathology as a separate subject. He is credited with first identifying transposition of the great vessels (TGV) and situs inversus.
Longo, L D (December 1975). "Classic pages in obstetrics and gynecology: an account of a particular change of structure in the human ovarium. Matthew Baillie, 1789". Am. J. Obstet. Gynecol.123 (7): 770. PMID1106198.
Tubbs, R Shane; Loukas Marios; Shoja Mohammadali M; Oakes W Jerry (October 2007). "Matthew Baillie (1761-1823) and his early detailed descriptions of childhood hydrocephalus in the Morbid Anatomy". J. Neurosurg.107 (4 Suppl): 338-41. doi:10.3171/PED-07/10/338. PMID17941502.
Carr, I (1992). ""Not on the outward appearance .... but on the heart." Matthew Baillie and cardiology". The Canadian Journal of Cardiology. 8 (1): 78-82. PMID1617515.
Attwood, H D (August 1979). "Matthew Baillie--a possible early description of amniotic fluid embolism". The Australian & New Zealand Journal of Obstetrics & Gynaecology. 19 (3): 176-7. doi:10.1111/j.1479-828X.1979.tb02749.x. PMID391211.